Publications

* Graduate student, Hotchkiss Lab (primary advisee or co-advised)  

** Undergraduate student, Hotchkiss Lab


Corline, N.J., E.R. Hotchkiss, B. Badgley, B.D. Strahm, D.T. Scott, & D.L. McLaughlin. Online early. Tadpole aggregations create biogeochemical hotspots in wetland ecosystems. Journal of Animal Ecology. https://besjournals.onlinelibrary.wiley.com/doi/10.1111/1365-2656.14222 [open access]


Naseri, M.Y., C. Snyder, K.X. Pérez-Rivera*, S. Bhandari, H.A. Workneh, N. Aryal, G. Biswas, E.C. Henrick, E.R. Hotchkiss, M.K. Jha, S. Jiang, E. Kern, V.K. Lohani, L.T. Marston, C.P. Vanags, & K. Zia. Online early. Integrating Data Science into Undergraduate Science and Engineering Courses: Lessons Learned by Instructors in a Multi-University Research Practice Partnership. Institute of Electrical and Electronics Engineers (IEEE) Transactions on Education. https://ieeexplore.ieee.org/document/10666964 [open access]


Monofy, A., S.B. Grant, F. Boano, M.A. Rippy, J.D. Gomez-Velez, S.S. Kaushal, E.R. Hotchkiss, & S. Shelton. 2024. Toward a universal model of hyporheic exchange and nutrient cycling in streams. AGU Advances 5: e2024AV001373. https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2024AV001373 [open access]


López Lloreda, C.*, J. Maze, D. McLaughlin, C.N. Jones, D. Scott, M. Palmer, K. Wardinski, N. Corline, & E.R. Hotchkiss. 2024. CO2 and CH4  concentrations in headwater wetlands influenced by morphology and changing hydro-biogeochemical conditions. Ecosystems 27: 999-1019. https://link.springer.com/article/10.1007/s10021-024-00936-7 [open access] [data]


Iannucci, F.M., J.B. Jones, K. Olson, M.E. Muscarella, & E.R. Hotchkiss. 2024. Temperature and flow control organic carbon metabolism in boreal headwater streams. Journal of Geophysical Research – Biogeosciences 10: e2024JG008281. https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2024JG008281 [open access]


Hare, D.K., A.M. Helton, C.S. Cummins, P.M. Bumpers, N.J. Tomczyk, P.A. Rogers, S.J. Wenger, E.R. Hotchkiss, A.D. Rosemond, & J.P. Benstead. 2024. Leaf litter breakdown phenology in headwater stream networks is modulated by groundwater thermal regimes and litter type. Limnology and Oceanography Letters 9: 532-542. https://aslopubs.onlinelibrary.wiley.com/doi/10.1002/lol2.10423 [open access]


Sadro, S., E.R. Hotchkiss, K.L. Cottingham, M.J. Vanni, S.L. Speir, & C.M. O'Reilly. 2024. Revisiting the Freshwater Imperative: Harnessing Team Science to Face Emerging Challenges to Freshwaters. Limnology and Oceanography Bulletin 33: 101-106.  https://aslopubs.onlinelibrary.wiley.com/doi/10.1002/lob.10645 [open access]


DeVilbiss, S.E., B.D. Badgley, E.R. Hotchkiss, & M.K. Steele. 2024. Subsidy-stress response of ecosystem functions along experimental freshwater salinity gradients. Biogeochemistry 167: 743-757. https://doi.org/10.1007/s10533-024-01131-5 [open access]


Hotchkiss, E.R. & T. DelSontro. 2024. Organic Carbon Cycling and Ecosystem Metabolism. Chapter 28 (pp 939-997) In: Wetzel’s Limnology: Lake and River Ecosystems, 4th Edition.  Jones, I.D. & J.P. Smol, Eds. Academic Press. ISBN: 9780128227015 [contact Erin for PDF of chapter]


Bretz, K.A.*, N.M. Murphy**, & E.R. Hotchkiss. 2023. Carbon biogeochemistry and export governed by flow in a non-perennial stream. Water Resources Research 59: e2022WR034004. https://doi.org/10.1029/2022WR034004 [open access] [data]


Plont, S.*, D. Scott, & E.R. Hotchkiss. 2023. Biogeochemical processes are altered by non-conservative mixing at stream confluences. Water Resources Research 59: e2022WR034224. https://doi.org/10.1029/2022WR034224 [open access] [data]


Conroy, H., E.R. Hotchkiss, K.M. Cawley, K. Goodman, R.O. Hall, J.B. Jones, W.M. Wollheim, & D. Butman. 2023. Seasonality Drives Carbon Emissions along a Stream Network. Journal of Geophysical Research – Biogeosciences 128: e2023JG007439. https://doi.org/10.1029/2023JG007439 [open access] [data & code]


Tomczyk, N.J., A.D. Rosemond, J.S. Kominoski, D.W.P. Manning, J.P Benstead, V. Gulis, S.A. Thomas, E.R. Hotchkiss, & A.M. Helton. 2023. Nitrogen and phosphorus uptake stoichiometry tracks supply during two-year whole-ecosystem nutrient additions. Ecosystems 26: 1018-1032. https://link.springer.com/article/10.1007/s10021-022-00813-1 [full text] [data & code]


O’Reilly, C.M., J. Cross, K.L. Cottingham, E.R. Hotchkiss, A. Mook, S. Sadro, & M. Vanni. 2023. Revisiting the Freshwater Imperative: Grand Challenges Survey and Workshop. Limnology and Oceanography Bulletin 32: 35-36. https://aslopubs.onlinelibrary.wiley.com/doi/10.1002/lob.10551 [PDF]


DelVecchia, A.G., S. Rhea, K.S. Aho, E.H. Stanley, E.R. Hotchkiss, A. Carter, & E.S. Bernhardt. 2023. Variability and drivers of CO2, CH4, and N2O concentrations in streams across the United States. Limnology & Oceanography 68: 394-408. https://doi.org/10.1002/lno.12281 [open access]


Battin, T.J., E. Bernhardt, E. Bertuzzo, L. Gómez Gener, R.O. Hall, E.R. Hotchkiss, R. Lauerwald, T. Maavara, T. Paveksly, L. Ran, P. Raymond, P. Regnier, & J. Rosentreter. 2023. River ecosystem metabolism and carbon biogeochemistry in a changing world. Nature 613: 449-459. https://www.nature.com/articles/s41586-022-05500-8 [PDF]


Bertuzzo, E., E.R. Hotchkiss, A. Argerich, J.S. Kominoski, D. Oviedo-Vargas, P. Savoy, R. Scarlett, D. von Schiller, & J.B. Heffernan. 2022. Respiration regimes in rivers: Partitioning source-specific respiration from metabolism time series. Limnology & Oceanography 67: 2374-2388. https://doi.org/10.1002/lno.12207. [open access] [data & code]


Tromboni, F., E.R. Hotchkiss, A.E. Schechner, W.K. Dodds, S.R. Poulson, & S. Chandra. 2022. High rates of daytime river metabolism are an underestimated component of carbon cycling. Communications Earth & Environment 3: 270. https://doi.org/10.1038/s43247-022-00607-2. [open access] [data]


Naseri, M.Y., C. Snyder, B. McLoughlin, S. Bhandari, N. Aryal, G. Biswas, E. Henrick, E.R. Hotchkiss, M.K. Jha, S.X. Jiang, E.C. Kern, V.K. Lohani, L.T. Marston, C.P. Vanags, & K. Xia. 2022. A modular approach for integrating data science concepts into multiple undergraduate STEM+C courses. American Society for Engineering Education Conference Proceedings. https://peer.asee.org/42010. [open access]


Grant, S.B., M.A. Rippy, T.A. Birkland, T. Schenk, K. Rowles, S. Misra, P. Aminpour, S. Kaushal, P. Vikesland, E. Berglund, J.D. Gomez-Velez, E.R. Hotchkiss, G. Perez, H.X. Zhang, K. Armstrong, S.V. Bhide, L. Krauss, C. Mass, K. Mendoza, C. Shipman, Y. Zhang, & Y. Zhong. 2022. Can common pool resource theory catalyze stakeholder-driven solutions to the freshwater salinization syndrome? Environmental Science & Technology 56: 13517-13527. https://doi.org/10.1021/acs.est.2c01555. [open access]


Wardinski, K.M., E.R. Hotchkiss, C.N. Jones, D.L. McLaughlin, B.D. Strahm, & D.T. Scott. 2022. Water soluble organic matter from soils at the terrestrial-aquatic interface in wetland-dominated landscapes. Journal of Geophysical Research – Biogeosciences 127: e2022JG006994. https://doi.org/10.1029/2022JG006994. [open access] [data]


García, V.J., E.R. Hotchkiss, & P. Rodríguez. 2022. Ecosystem metabolism in sub-Antarctic streams and rivers impacted by non-native beaver. Aquatic Sciences 84: 54. https://doi.org/10.1007/s00027-022-00876-1. [PDF] [data]


Plont, S.*, J. Riney**, & E.R. Hotchkiss. 2022. Integrating perspectives on dissolved organic carbon removal and whole-stream metabolism. Journal of Geophysical Research – Biogeosciences 127: e2021JG006610. https://doi.org/10.1029/2021JG006610. [PDF] [data]


O'Donnell, B*. & E.R. Hotchkiss. 2022. Resistance and resilience of stream metabolism to high flow disturbances. Biogeosciences 19: 1111–1134. https://doi.org/10.5194/bg-19-1111-2022. [open access] [data]


Bretz, K.A.*, A.R. Jackson**, S. Rahman**, J.M. Monroe**, & E.R. Hotchkiss. 2021. Integrating ecosystem patch contributions to stream corridor carbon dioxide and methane fluxes. Journal of Geophysical Research – Biogeosciences 126: e2021JG006313. https://doi.org/10.1029/2021JG006313. [open access]


Grant, S.B., H. Zhang, S.V. Bhide, T. Birkland, E. Berglund, A. Dietrich, J.L. Druhan, M. Edwards, S. Entrekin, J. Gomez-Velez, E. Hester, E.M.V. Hoek, E.R. Hotchkiss, D. Jassby, S.S. Kaushal, P. Kumar, K. Lopez, A. Maile-Moskowitz, K. McGuire, S. Mohanty, E.A. Parker, G. Prelewicz, M.A. Rippy, E.J. Rosenfeldt, T. Schenk, K. Schwabe, & P. Vikesland. 2021. Reversing Freshwater Salinization: A Holistic Approach. Advances in Water Research 31(3): 24-29. https://www.advancesinwaterresearch.org/awr/library/item/20210709/3945381/ [open access]


Gómez-Gener, L., E.R. Hotchkiss, H. Laudon, & R.A. Sponseller. 2021. Integrating discharge-concentration dynamics across carbon forms in a boreal landscape. Water Resources Research 57: e2020WR028806. doi:10.1029/2020WR028806. [open access]


Snyder, C., D.M. Asamen, M.Y. Naseri, N. Aryal, G. Biswas, A. Dubey, E. Henrick, E.R. Hotchkiss, M.K. Jha, S.X. Jiang, E.C. Kern, V.K. Lohani, L.T. Marston, C.P. Vanags, & K. Xia. 2021. Understanding data science instruction in multiple STEM domains. American Society for Engineering Education Conference Proceedings (peer-reviewed). https://peer.asee.org/37955. [open access]


Hamdan, M.*, P. Byström, E.R. Hotchkiss, M.J. Al-Haidarey, & J. Karlsson. 2021. An experimental test of climate change effects in Northern lakes: Increasing allochthonous organic matter and warming alters autumn primary production. Freshwater Biology 66: 815– 825. doi: 10.1111/fwb.13679 [open access]


Lakoba, V.T., L.L. Wind, S.E. DeVilbiss, M.E. Lofton, K.A. Bretz*, A.R. Weinheimer, C.E. Moore, C. Baciocco, E.R. Hotchkiss, & W.C. Hession. 2021. Salt Dilution and Flushing Dynamics of an Impaired Agricultural-Urban Stream. ES&T | Water 1: 407-416. doi: 10.1021/acsestwater.0c00160 [PDF]


Plont, S.*, B.M. O'Donnell*, M.T. Gallagher**, & E.R. Hotchkiss. 2020. Linking Carbon and Nitrogen Spiraling in Streams. Freshwater Science 39: 126-136. doi: 10.1086/707810 [PDF] [Supplemental Files]


O'Donnell, B.* & E.R. Hotchkiss. 2019. Coupling Concentration- and Process-Discharge Relationships Integrates Water Chemistry and Metabolism in Streams. Water Resources Research 55: 10179-10190. doi: 10.1029/2019WR025025 [open access]


Klaus, M., E. Geibrink, E.R. Hotchkiss, & J. Karlsson. 2019. Listening to air-water gas exchange in running waters. Limnology & Oceanography: Methods 17: 395-414. doi: 10.1002/lom3.10321 [PDF] Video Abstract


Barney, J., T. Schenk, D. Haak, S. Salom, B. Brown, & E.R. Hotchkiss. 2019. Building Partnerships and Bridging Science and Policy to Address the Biological Invasions Crisis. Invasive Plant Science and Management 12: 74-78. doi: 10.1017/inp.2018.33 [PDF]


Hamdan, M.*, P. Byström, E.R. Hotchkiss, M.J. Al-Haidarey, J. Ask, & J. Karlsson. 2018. Carbon dioxide stimulates lake primary production. Scientific Reports 8: 10878. doi:10.1038/s41598-018-29166-3 [open access]


Hotchkiss, E.R., S. Sadro, & P.C. Hanson. 2018. Toward a more integrative perspective on carbon metabolism across lentic and lotic inland waters. Limnology & Oceanography Letters 3: 57-63. doi:10.1002/lol2.10081 [open access]


Creed, I.F., A.K. Bergström, C.G. Trick, N.B. Grimm, D.O. Hessen, J. Karlsson, K.A. Kidd, E. Kritzberg, D.M. McKnight, E.C. Freeman, O.E. Senar, A. Andersson, J. Ask, M. Berggren, M. Cherif, R. Giesler, E.R. Hotchkiss, P. Kortelainen, M.M. Palta, T. Vrede, & G.A. Weyhenmeyer. 2018. Global change-driven effects on dissolved organic matter composition: Implications for food webs of northern lakes. Global Change Biology 24: 3692-3714. doi:10.1111/gcb.14129 [PDF]


Hall, R.O. & E.R. Hotchkiss. 2017. Stream Metabolism. Chapter 34 In: Methods in Stream Ecology, volume 2, 3rd Edition. Hauer, F.R.  & G.A. Lamberti, Eds. Academic Press. ISBN: 9780128130476. [contact Erin for PDF of chapter; Supplemental Files can be downloaded as a .zip here]


Mineau, M.M., W.M. Wollheim, I.D. Buffam, S.E.G. Findlay, R.O. Hall, E.R. Hotchkiss, L.E. Koenig, W.H. McDowell, & T.B. Parr. 2016. Dissolved organic carbon uptake in streams: A review and assessment of reach-scale measurements. Journal of Geophysical Research - Biogeosciences 121: 2019-2029. doi:10.1002/2015JG003204 [open access]


Hall, R.O., J.L. Tank, M.A. Baker, E.J. Rosi-Marshall, & E.R. Hotchkiss. 2016. Metabolism, gas exchange, and carbon spiraling in rivers. Ecosystems 19: 73-86. doi:10.​1007/​s10021-015-9918-1 [PDF]


Hotchkiss, E.R., R.O. Hall, R.A. Sponseller, D. Butman, J. Klaminder, H. Laudon, M. Rosvall, & J. Karlsson. 2015. Sources of and processes controlling CO2 emissions change with the size of streams and rivers. Nature Geoscience 8: 696-699. doi:10.1038/ngeo2507 [PDF]


Burrows, R.M., E.R. Hotchkiss, M. Jonsson, H. Laudon, B.G. McKie, & R.A. Sponseller. 2015. Nitrogen limitation of heterotrophic biofilms in boreal streams. Freshwater Biology 60: 1237-1251. doi:10.1111/fwb.12549 [PDF]


Hotchkiss, E.R. & R.O. Hall. 2015. Whole-stream 13C tracer addition reveals distinct fates of newly fixed carbon. Ecology 96: 403-416. doi:10.1890/14-0631.1 [PDF]


Jonsson, M., P. Hedström, K. Stenroth, E.R. Hotchkiss, F. Vasconcelos, J. Karlsson, & P. Byström. 2015. Climate change modifies the size structure of assemblages of emerging aquatic insects. Freshwater Biology 60: 78-88. doi:10.1111/fwb.12468 [PDF]


Hotchkiss, E.R., R.O. Hall, M.A. Baker, E.J. Rosi-Marshall, & J.L. Tank. 2014. Modeling priming effects on microbial consumption of dissolved organic carbon in rivers. Journal of Geophysical Research - Biogeosciences 119: 982-995. doi:10.1002/2013JG002599 [open access]


Hotchkiss, E.R. & R.O. Hall. 2014. High rates of daytime respiration in three streams: Use of δ18O2 and O2 to model diel ecosystem metabolism. Limnology & Oceanography 59: 798-810. doi:10.4319/lo.2014.59.3.0798 [PDF


Hotchkiss, E.R., E. Flaherty, A. Krist, & C. Martinez del Rio. 2012. Lab Manual for Animal Biology, University of Wyoming. Fountainhead Press, Inc.


Hubbard, K.A., L.K. Lautz, M.J. Mitchell, B. Mayer, & E.R. Hotchkiss. 2010. Evaluating nitrate uptake in a Rocky Mountain stream using labelled 15N and ambient nitrate chemistry. Hydrological Processes 24: 3322-3336. doi:10.1002/hyp.7764 [PDF]


Hotchkiss, E.R. & R.O. Hall. 2010. Linking calcification by exotic snails to stream inorganic carbon cycling. Oecologia 163: 235-245. doi:10.1007/s00442-009-1536-1 [PDF]


Solomon, C.T., E.R. Hotchkiss, J.M. Moslemi, A.J. Ulseth, E.H. Stanley, R.O. Hall, & A.S. Flecker. 2009. Sediment size and nutrients regulate denitrification in a tropical stream. Journal of the North American Benthological Society* 28: 480-490. doi:10.1899/07-157.1 [PDF] *now Freshwater Science


Hotchkiss, E.R., A.K. Davis, J.J. Cherry, & S. Altizer. 2005. Mycoplasmal conjunctivitis and the behavior of wild house finches (Carpodacus mexicanus) at bird feeders. Bird Behavior 17: 1-8. [PDF]